EU Udbud Interpretation tool for somatic variants

Nationalt Genom Center

The core mission of the NGC is to establish and operate a state-of-the-art and secure national infrastructure for personalised medicine in cooperation with the Regions and universities. NGC routinely performs Whole Genome Sequencing (WGS) and subsequent bioinformatics analysis of samples from the regional healthcare system. Several patient groups with various diseases have already been enrolled, including cancer patients. For this, NGC needs an interpretation tool for analysing somatic variants. NGC sequences WGS samples at NGC’s sequencing facilities, followed by processing by bioinformatics pipelines developed in-house. After quality control, processed samples are relayed to clinical academics in the regional healthcare system for interpretation and treatment decision(s).

Deadline

Fristen for modtagelse af bud var på 2022-02-16. Indkøbet blev offentliggjort på 2022-01-17.

Hvem?

• Nationalt Genom Center

Hvad?

Hvor?

• Danmark

Indkøbshistorik

Dato	Dokument
2022-01-17	Udbudsbekendtgørelse
2022-01-21	Supplerende oplysninger
2022-02-23	Bekendtgørelse om indgåede kontrakter

Udbudsbekendtgørelse (2022-01-17)
Objekt
Omfanget af udbuddet
Titel: Programpakker og informationssystemer
Referencenummer: EU Udbud Interpretation tool fo
Kort beskrivelse:

Bekendtgørelsens metadata
Originalsprog: engelsk 🗣️
Dokumenttype: Udbudsbekendtgørelse
Kontraktens art: Varer
Forordning: Den Europæiske Union, med deltagelse af GPA-lande
Fælles glossar for offentlige kontrakter (CPV)
Kode: Programpakker og informationssystemer 📦
Yderligere CPV-kode: Programpakke til medicinsk brug 📦
Sted for udførelsen
NUTS-region: Danmark 🏙️

Procedure
Procedureform: Offentligt udbud
Bud-type: Indsendelse gældende for alle delaftaler
Kriterier for tildeling
Det økonomisk mest fordelagtige bud

Ordregivende myndighed
Identitet
Land: Danmark 🇩🇰
Type af ordregivende myndighed: Ministerium eller anden myndighed på nationalt plan eller forbundsplan
Navn på ordregivende myndighed: Nationalt Genom Center
Postadresse: Ørestads Boulevard 5
Postnummer: 2300
Postby: København S
Kontakt
Internetadresse: https://ngc.dk/ 🌏
E-mail: eks_albu@ngc.dk 📧
Telefon: +45 24971765 📞
URL til dokumenter: http://eu.eu-supply.com/app/rfq/rwlentrance_s.asp?PID=321550&B=DK_UDBUD 🌏
URL til deltagelse: http://eu.eu-supply.com/app/rfq/rwlentrance_s.asp?PID=321550&B=DK_UDBUD 🌏

Reference
Datoer
Afsendelsesdato: 2022-01-17 📅
Tilbudsfrist: 2022-02-16 📅
Offentliggørelsesdato: 2022-01-21 📅
Identifikatorer
Bekendtgørelsesnummer: 2022/S 015-032438
EUT-S-nummer: 15

Objekt
Omfanget af udbuddet
Kort beskrivelse:

The Danish National Genome Center (NGC) was established to realise the National Strategy for Personalised Medicine 2017–2020. It is intended to ensure governance and coordination of the strategy’s initiatives at the national level. The Danish efforts within Personalised Medicine are to focus on the patients. The vision of NGC is to create a foundation for the development of a more precise diagnosis, targeted treatment and strengthened research within the Danish healthcare system. The core mission of the NGC is to establish and operate a state-of-the-art and secure national infrastructure for personalised medicine in cooperation with the Regions and universities. NGC routinely performs Whole Genome Sequencing (WGS) and subsequent bioinformatics analysis of samples from the regional healthcare system. Several patient groups with various diseases have already been enrolled, including cancer patients. For this, NGC needs an interpretation tool for analysing somatic variants. NGC sequences WGS samples at NGC’s sequencing facilities, followed by processing by bioinformatics pipelines developed in-house. After quality control, processed samples are relayed to clinical academics in the regional healthcare system for interpretation and treatment decision(s). The users of the solution will be clinical scientists from the regional healthcare system and researchers from the universities. Roughly estimated, we expect around 50-60 different sites/groups in Denmark, with 10 – 20 users per site/group. We anticipate around a maximum of 20 concurrent users. The users will log into the on-premise NGC HPC system and NGC Private Clouds, wherefrom they will access the interpretation tool solution, analyse data within the HPC infrastructure and decide the correct treatment strategy for the patient. Once relevant variant(s) have been identified, these will be parsed to a variant database that can be consulted if a new sample contains the same variant.

Varighed: 48 måneder
Beskrivelse af mulighederne: The contract is 3 years with an option to prolong 1x 1 year.

Juridiske, økonomiske, finansielle og tekniske oplysninger
Betingelser for deltagelse
Økonomisk og finansiel stilling:

Minimum level for economic and financial standing

It is described below which minimum levels for economic and financial suitability are applicable for this tender. The Tenderer must meet the following requirements:

• The average turnover in the last three audited financial years must be minimum 2.500.000 Euro per year

• The average profit margin in the last three audited financial years must be minimum 0 (zero) and

• The solvency ratio in the last audited financial year must be minimum 0 (zero).

Teknisk og faglig kompetence:

The Tenderer must meet the following requirements:

• Two references from similar contracts within clinical diagnostics.

• The Contracts must be in progress, i.e. have passed initial tests and be/have been in use.

• The Contracts must entail a Minimum of 10 simultaneous users.

• The references must not be more than 3 years old from application date.

Procedure
Retsgrundlag: 32014L0024
Tidspunkt for modtagelse af tilbud: 12:00
Sprog, på hvilke bud eller ansøgninger om deltagelse kan indgives: engelsk 🗣️
Tilbuddets gyldighedsperiode: 6 måneder
Dato for åbning af tilbud: 2022-02-16 📅
Tidspunkt for åbning af tilbud: 12:00

Ordregivende myndighed
Identitet
Nationalt registreringsnummer: 39851490
Kontakt
Enhed: Alexi Bergmann Burns-Tang
Køberprofilens adresse: https://eu.eu-supply.com/ctm/Company/CompanyInformation/Index/436453 🌏
URL til dokumenter: http://eu.eu-supply.com/app/rfq/rwlentrance_s.asp?PID=321550&B=DK_UDBUD 🌏

Supplerende oplysninger
Gennemgå organ
Navn: Klagenævnet for Udbud
Postadresse: Nævnenes Hus, Toldboden 2
Postby: Viborg
Postnummer: 8800
Land: Danmark 🇩🇰
Telefon: +45 35291000 📞
E-mail: klfu@naevneneshus.dk 📧
Internetadresse: https://erhvervsstyrelsen.dk/klagevejledning-0 🌏
Oplysninger om frister for klageprocedurer:

Klagenævnet for Udbud) § 7, Section 1. Complaint regarding the award of contract: Complaint regarding the award of contract must be submitted no later than45 calendar days from the date after the Contracting Authority has published a contract award notice in the European Union Official Journal informing that the Contracting Authority has awarded the contract, cf. Law regarding Complaints board (in danish Klagenævnet for Udbud) § 7, Section 2, No 1. Complaint regarding the award of a contract under a Framework Agreement with a reopening of the competition: complaint regarding the award of a contract under a Framework Agreement with a reopening of the competition must be submitted no later than 30 calendar days form the date after the Contracting Authority has notified the concerned tenderers that a contract has been awarded, if the notification includes the grounds for the decision, Cf. Law regarding Complaints board (in danish Klagenævnet for Udbud) § 7, Section 2, No 2. Complaint regarding the award of a Framework Agreement: Complaint regarding the award of a Framework Agreement must be submitted no later than 6 months from the date after the Contracting Authority have notified the concerned candidates and tenderers that award of contract has happened, cf. Law Regarding the Complaints board (in Danish Klagenævnet for Udbud) § 7, Section 2, No 3. Complaint regarding direct award of contract: Complaint regarding the Contracting Authority’s award of contract without prior publication of a Contract Notice in the European Union Official Journal must be VI.4.4) submitted no later than 30 calendar days from the date after a contract award notice has been published by the Contracting Authority in the European Union Official Journaland that contract award notice includes the grounds for the decision to award the contract directly, cf. Law regarding Complaints board (in danish Klagenævnet for Udbud) § 7, Section 3. Compliant regarding public procurements below the EU threshold: Complaint regarding public procurements below the EU threshold must be Submitted no later than 45 calendar days from the date after the Contracting Authority has notified the tenderers about the award of contract if this notification includes the grounds for the decision; and no later than 6 months after the date where the Contracting Authority has notified the candidates and tenderers

Oplysninger om frister for klageprocedurer

5 / 5

about that award of a Framework Agreement, if the notification includes the grounds for the decision, cf. Law regarding Complaints board (in danish Klagenævnet for Udbud) § 7, section 4, No 1 and 2. Compliant regarding a decision on shortlisting on procurement below the EU threshold must be submitted no later than 20 calendar days from the date after the Contracting Authority has sent a notification to the concerned candidates regarding who has been selected and this notification includes the grounds for the decision, cf. Law regarding Complaints board (in danish Klagenævnet for Udbud) § 7, Section 5.

Tjeneste, hvorfra der kan indhentes oplysninger om klageproceduren
Navn: Konkurrence- og Forbrugerstyrelsen
Postadresse: Carl Jacobsens Vej 35
Postby: Valby
Postnummer: 2500
Telefon: +45 41715000 📞
E-mail: kfst@kfst.dk 📧
Internetadresse: http://www.kfst.dk 🌏
Kilde: OJS 2022/S 015-032438 (2022-01-17)

Supplerende oplysninger (2022-01-21)
Objekt
Bekendtgørelsens metadata
Dokumenttype: Supplerende oplysninger

Reference
Datoer
Afsendelsesdato: 2022-01-21 📅
Offentliggørelsesdato: 2022-01-26 📅
Identifikatorer
Bekendtgørelsesnummer: 2022/S 018-043586
Henviser til bekendtgørelse: 2022/S 015-032438
EUT-S-nummer: 18
Kilde: OJS 2022/S 018-043586 (2022-01-21)

Bekendtgørelse om indgåede kontrakter (2022-02-23)
Objekt
Bekendtgørelsens metadata
Dokumenttype: Bekendtgørelse om indgåede kontrakter

Procedure
Bud-type: Finder ikke anvendelse

Reference
Datoer
Afsendelsesdato: 2022-02-23 📅
Offentliggørelsesdato: 2022-02-28 📅
Identifikatorer
Bekendtgørelsesnummer: 2022/S 041-106191
EUT-S-nummer: 41

Objekt
Omfanget af udbuddet
Beskrivelse af mulighederne: Cloud solution

Procedure
Kriterier for tildeling
Kvalitetskriterium (navn): Written response
Kvalitetskriterium (vægtning): 35
Kvalitetskriterium (navn): Demonstration of the solution
Kvalitetskriterium (vægtning): 40
Kvalitetskriterium (navn): Minimum option for Cloud solution
Kvalitetskriterium (vægtning): 5
Pris (justeringskoefficient): 20
Kilde: OJS 2022/S 041-106191 (2022-02-23)

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